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NCMIR Software License

Mosaic Plug-ins for ImageJ

The set of ImageJ plug-ins included in this distribution form the mosaic processing software we use at NCMIR to process our large-scale brain maps and mosaics. The reason the software exists as ImageJ plug-ins is largely due to legacy and uses very little of the ImageJ functionality. Instead, the plug-ins make substantial use of the Java Advanced Imaging and Image I/O libraries for most of the image processing and file I/O. Consequently, image files created with the mosaic processing pipeline generally are not fully compatible with the built-in functionality of ImageJ.

* This distribution of ImageJ works only on Windows. Currently, we are not supporting other platforms.

Basic Requirements:

• Java 1.5 + (Developed and tested with JDK 1.5.0.06)
• Java Advanced Imaging 1.1.2 (http://java.sun.com/products/java-media/jai/)
• Java Advanced Imaging Image I/O Tools 1.0_01(http://java.sun.com/products/java-media/jai/)
• JadeDisplay (http://www.openchannelfoundation.org/projects/JadeDisplay/)
• Kakadu example programs 5.1.1 (for jpeg2000 support) (http://www.kakadusoftware.com)
• Ant & Cygwin (to build the files) (http://ant.apache.org/bindownload.cgi) (http://www.cygwin.com/)

Binary Download

Click here to download

Installation Instructions

Extract downloaded folder and execute “run.bat” inside extracted folder. You may need to adjust memory allocation for Java by editing “run.bat” file. In “run.bat”, you will see “–mx512m” option for 512MByte memory usage for Java. You can change this value for your environment.

Source Code Distribution

To checkout the module from CVS issue the following commands: