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Available Software

Cyberinfrastructure

Generalized Telemicroscopy System - Simulation Mode

GIS Portlet

SRB Portlet

Electron Microscopic Tomography

Dend

Fido

Jinx

Xvoxtrace

Large-Field Light Microscopy

ImageJ Mosaicking Plug-ins

Visualization

Btrack

JViewer

Synuview/OpenSynu

File Format Converters

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NCMIR Software License

File Format Converters

Requirements
Many of these are command line applications for various platforms.

Name Description
Documentation
Download
Photoshop Plug-in works on various versions of photoshop
Imodinfo gets information on an IMOD file
an2pgm converts an Analyze volume into Portable Gray Map
an2suprim converts an Analyze volume into SUPRIM
imodtoanalyze converts IMOD to Analyze 7.5 format
imodtosuprim converts IMOD to SUPRIM
Istac takes a stack of SUPRIM files and creates a SUPRIM volume
mrcconv converts to and from MRC, SUPRIM, IMOD and Analyze
mrcinfo gets information on an MRC file
mrctoanalyze converts MRC to Analyze 7.5 format
mrctomrc converts between MRC variants
mrctosuprim converts MRC to SUPRIM
pgm2an converts a stack of Portable Gray Map files to Analyze 7.5 format
slime Steve Lamont's Image Editor
suprim2pgm converts SUPRIM files to Portable Gray Map
suprimhist calculates histogram and image statistics for SUPRIM files
suprimtomrc converts SUPRIM to MRC
suprimtotiff converts SUPRIM to TIFF
supvol2an converts a SUPRIM volume file to Analyze 7.5 format
tifftoan converts a TIFF stack or series of files to Analyze 7.5 format
tifftosuprim converts a TIFF stack or series of files to SUPRIM format
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Updated July 20, 2006