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Current Publications
The multidisciplinary work of NCMIR researchers and their collaborators have been published in a variety of journals and presented in local, national, and international forums.
Publications for 2007 are listed below. To view previous
years, visit the archives page.
A search engine for publications will be added to
this site. Return to this section for updates.
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Bencheikh-Latmani R, Obraztsova A, Mackey MR, Ellisman MH and Tebo BM (2007) Toxicity of Cr(lll) to Shewanella sp. strain MR-4 during Cr(VI) reduction. Environ Sci Technol 41(1):214-220.
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Bielas SL, Serneo FF, Chechlacz M, Deerinck TJ, Perkins GA, Allen PB, Ellisman MH and Gleeson JG (2007) Spinophilin Facilitates Dephosphorylation of Doublecortin by PP1 to Mediate Microtubule Bundling at the Axonal Wrist. Cell 129(3):579-591.
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Boassa D, Ambrosi C, Qiu F, Dahl G, Gaietta GM and Sosinsky GE (2007) Pannexin1 channels contain a glycosylation site that targets the hexamer to the plasma membrane. J Biol Chem: Online Papers in Press.
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Bouwer JC, Mackey MR, Lawrence A, Deerinck TJ, Jones YZ, Terada M, Martone ME, Peltier ST and Ellisman MH (2007) The application of energy-filtered electron microscopy to tomography of thick, selectively stained biological samples. Methods Cell Biol 79:643-660.
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Bumbarger DJ, Crum J, Ellisman MH and Baldwin JG (2007) Three-dimensional fine structural reconstruction of the nose sensory structures of Acrobeles complexus compared to Caenorhabditis elegans (Nematoda: Rhabditida). J Morphol. 268(8):649-663.
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Chang SY, Zagha E, Kwon ES, Ozaita A, Bobik M, Martone ME, Ellisman MH, Heintz N and Rudy B (2007) Distribution of Kv3.3 potassium channel subunits in distinct neuronal populations of mouse brain. J Comp Neurol 502(6):953-972.
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Deerinck TJ, Giepmans BN, Smarr BL, Martone ME and Ellisman MH (2007) Light and electron microscopic localization of multiple proteins using quantum dots, in Methods in Molecular Biology 374:43-54.
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Gold JR, Perkins GA, Erb HN and Ainsworth DM (2007) Cytokine profiles of peripheral blood mononuclear cells isolated from septic and healthy neonatal foals. J Vet Intern Med 21(3):482-488.
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Johnson JE, GA Perkins, A Giddabasappa, S Chaney, W Xiao, AD White, JM Brown, J Waggoner, MH Ellisman, and DA Fox. Spatiotemporal regulation of ATP and Ca2+ dynamics in vertebrate photoreceptor ribbon synapses. Molecular Vision 13:887-919.
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Ju WK, Liu Q, Kim KY, Crowston JG, Lindsey JD, Agarwal N, Ellisman MH, Perkins GA and Weinreb RN (2007) Elevated Hydrostatic Pressure Triggers Mitochondrial Fission and Decreases Cellular ATP in Differentiated RGC-5 Cells. Investigative Ophthalmology and Visual Science 48(5):2145-2151.
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Kopek BG, Perkins G, Miller DJ, Ellisman MH and Ahlquist P (2007) Three-Dimensional Analysis of a Viral RNA Replication Complex Reveals a Virus-Induced Mini-Organelle. PLoS Biol 5(9):e220.
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Lewis JP, Mostafavi I, Sosinsky G, Martone M, West R. (2007) Shape priors by kernel density modeling of PCA residual structure. IEEE International Conference on Image Processing, September 16 – 19, 2007, San Antonio, TX. (Peer-reviewed conference publication).
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Martin BR, Deerinck TJ, Ellisman MH, Taylor SS and Tsien RY (2007) Isoform-Specific PKA Dynamics Revealed by Dye-Triggered Aggregation and DAKAP1alpha-Mediated Localization in Living Cells. Chem Biol 14(9):1031-1042.
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Martone ME, Sargis J, Tran J, Wong WW, Jiles H and Mangir C (2007) Database resources for cellular electron microscopy. Methods Cell Biol 79:799-822.
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Niikura Y, A Dixit, R Scott, GA Perkins, and K Kitagawa. (in press) BUB1 mediation of caspase-independent mitotic apoptosis determines cell fate. J. Cell Biol., in press.
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Oshima A, K Tani,Y Hiroaki, Y Fujiyoshi, and GE Sosinsky (2007) Three-dimensional structure of a human connexin26 gap junction channel reveals a plug in the vestibule. Proc. Natl. Acad. Sciences 104(24): 10034-10039.
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Perez GI, Acton BM, Jurisicova A, Perkins GA, White A, Brown J, Trbovich AM, Kim MR, Fissore R, Xu J, Ahmady A, D'Estaing SG, Li H, Kagawa W, Kurumizaka H, Yokoyama S, Okada H, Mak TW, Ellisman MH, Casper RF and Tilly JL (2007) Genetic variance modifies apoptosis susceptibility in mature oocytes via alterations in DNA repair capacity and mitochondrial ultrastructure. Cell Death Differ 14(3):524-533.
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Pezzoli K, Tukey R, Sarabia H, Zaslavsky I, Miranda ML, Suk WA, Lin A and Ellisman M (2007) The NIEHS Environmental Health Sciences Data Resource Portal: placing advanced technologies in service to vulnerable communities. Environ Health Perspect 115(4):564-571.
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Sosinsky GE, Crum J, Jones YZ, Lanman J, Smarr B, Terada M, Martone ME, Deerinck TJ, Johnson JE and Ellisman MH (2007) The combination of chemical fixation procedures with high pressure freezing and freeze substitution preserves highly labile tissue ultrastructure for electron tomography applications. J Struct Biol. 14-Sep-2007 Epub
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Sosinsky GE, Giepmans BN, Deerinck TJ, Gaietta GM and Ellisman MH (2007) Markers for correlated light and electron microscopy. Methods Cell Biol 79:575-591.
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Sosinsky GE, Solan GL, Gaietta GM, Lee GJ, Mackey MR, Lampe PD (2007) The C-terminus of Connexin43 Adopts Different Conformations in the Golgi and Gap Junction as Detected with Structure Specific Antibodies. (in press for Biochemical Journal)
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Sun MG, Williams J, Munoz-Pinedo C, Perkins GA, Brown JM, Ellisman MH, Green DR and Frey TG (2007) Correlated three-dimensional light and electron microscopy reveals transformation of mitochondria during apoptosis. Nat Cell Biol 9(9):1057-1072.
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Toni N, Teng EM, Bushong EA, Aimone JB, Zhao C, Consiglio A, van Praag H, Martone ME, Ellisman MH and Gage FH (2007) Synapse formation on neurons born in the adult hippocampus. Nature Neuroscience 10(6):727-34, 2007.
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Ure J, Procter R, Martone M, Porteous D, Lloyd S, Lawrie S, Job D, Baldock R, Philp A, Liewald D, Rakebrandt F, Blaikie A, McKay C, Anderson S, Ainsworth J, van Hemert J, Blanquer I, Sinnott R, Barillot C, Gibaud FB, Williams A, Hartswood M, Watson P, Smith L, Burger A, Kennedy J, Gonzalez-Velez H, Stevens R, Corcho O, Morton R, Linksted P, Deschenes M, McGilchrist M, Johnson P, Voss A, Gertz R and Wardlaw J (2007) Data Integration in eHealth: A Domain/Disease Specific Roadmap. Stud Health Technol Inform 126:144-153.
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Xuong NH, Jin L, Kleinfelder S, Li S, Leblanc P, Duttweiler F, Bouwer JC, Peltier ST, Milazzo AC and Ellisman M (2007) Future directions for camera systems in electron microscopy. Methods Cell Biol 79:721-739.
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Yamaguchi R, Andreyev A, Murphy AN, Perkins GA, Ellisman MH and Newmeyer DD (2007) Mitochondria frozen with trehalose retain a number of biological functions and preserve outer membrane integrity. Cell Death Differ 14(3):616-624.
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Yu J, Bippes CA, Hand GM, Muller DJ and Sosinsky GE (2007) Aminosulfonate modulated pH induced conformational changes in connexin26 hemichannels. J Biol Chem 16:16.
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Yuan H, Gerencser AA, Liot G, Lipton SA, Ellisman M, Perkins GA and Bossy-Wetzel E (2007) Mitochondrial fission is an upstream and required event for bax foci formation in response to nitric oxide in cortical neurons. Cell Death Differ 14(3):462-471.
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Zemljic-Harpf AE, Miller JC, Henderson SA, Wright AT, Manso AM, Elsherif L, Dalton ND, Thor AK, Perkins GA, McCulloch AD and Ross RS (2007) Cardiac-Myocyte Specific Excision of the Vinculin Gene Disrupts Cellular Junctions Causing Sudden Death or Dilated Cardiomyopathy. Mol Cell Biol. Sep 4; [Epub ahead of print]
| Oral and Poster Presentations |
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Boassa D, C Ambrosi , G Dahl, G Gaietta and G Sosinsky (2007) Pannexin 1 channels contain a glycosylation site that targets the oligomer to the plasma membrane. International Gap Junction Conference 2007, August 4-9, Elsinore, Denmark.
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Deerinck TD, and MH Ellisman (2007) The Application of Fluorescent Quantum
Dots to Confocal, Multi-Photon, and Electron Microscopic Imaging,
26th Annual Symposium on Toxicologic Pathology and Novel
Technologies, Puerto Rico. June 14, 2007
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Fong LL, Larson SD, Gupta A, Condit C, Bug WJ, Chen L, West R,
Lamont S, Terada M, Martone ME (2007) An Ontology-Driven Knowledge
Environment for Subcellular Neuroanatomy, OWL: Experiences and
Directions, Innsbruck, Austria.
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Larson SD, Fong LL, Chen L, Gupta A, Condit C, Martone ME, (2007)
Reasoning Over Multi-Scale Neuroanatomical OWL Ontologies Aids
Neural Model Construction. 11th International Conference on
Cognitive and Neural Systems, Boston University.
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Larson SD, Martone ME (2007) Rule-Based Reasoning with a Multi-Scale
Neuroanatomical Ontology, OWL: Experiences and Directions,
Innsbruck, Austria.
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Liang CK, JP Schulze, R West, ME Martone, and MB Zwicker (2007) Bridging the Resolution Gap: Superimposition of Multiple Multi-Channel Volumes, Poster presented at the 34th Intl. Conf. & Exhibit. Comp. Graphics & Interact. Techniques (SIGGRAPH 2007), August 5-9 20007, San Diego. [ abstract PDF]
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Perkins G, and MH Ellisman (2007) Unique structures of mitochondria for
varied neuronal functions, International Society for
Neurochemistry Meeting, Cancun, Mexico. August 19-24, 2007
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Journal
Covers
Below are recent journal covers
featuring NCMIR images. View additional covers in
the archive.
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